Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5099909/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  218,973,801
 Normal Paired: 191,434,275 (87.42%)
 Chimeric Paired: 23,869,777 (10.90%)
 Chimeric Ambiguous: 3,081,619 (1.41%)
 Unmapped: 588,130 (0.27%)
 Ligation Motif Present: 37,053 (0.02%)
Alignable (Normal+Chimeric Paired): 215,304,052 (98.32%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-08-30T22:51:09,380]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 58,106,701 (26.54%)
PCR Duplicates: 157,197,351 (71.79%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 59,731,396
Intra-fragment Reads: 30,718,047 (14.03% / 52.86%)
Below MAPQ Threshold: 4,574,305 (2.09% / 7.87%)
Hi-C Contacts: 22,814,349 (10.42% / 39.26%)
 Ligation Motif Present: 12,413  (0.01% / 0.02%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 27% - 25% - 25% - 23%
Inter-chromosomal: 3,843,388  (1.76% / 6.61%)
Intra-chromosomal: 18,970,961  (8.66% / 32.65%)
Short Range (<20Kb): 11,255,527  (5.14% / 19.37%)
Long Range (>20Kb): 7,715,429  (3.52% / 13.28%)